David Navarro‐Payá

AEGIS standardizes and validates genome annotation files, enabling reliable downstream analysis through error correction and comparative genomics tools.

The paper identifies and validates p-coumaroyl-CoA 2'-hydroxylases as key enzymes in oxyresveratrol biosynthesis in mulberry, using genomic, transcriptomic, and functional approaches.

The paper constructs organ-level gene regulatory networks in tomato using RNA-seq data and validates them with DAP-seq, identifying key and novel transcription factors involved in fruit ripening and ABA response.

The paper constructs a grapevine drought stress transcriptome atlas using meta-analysis of 1107 datasets, enabling exploration of gene expression and co-expression networks related to drought tolerance.

The paper introduces PlantaeViz, a web-based platform for integrating, visualizing, and analyzing multi-omics data across plant species, with a focus on transcriptomics and functional annotations.

The paper improves the grapevine genome reference PN40024.v4 using long-read sequencing, enhancing continuity, haplotype resolution, and gene annotation.