Author

Kingshuk Mukherjee

University of FloridaORCID 0000-0002-1647-8741Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Research Focus:clustering· 1 Organism:E. coli· 1 Research Focus:genome assembly· 1 Assay:GWAS summary statistics· 1

Frequent Co-Authors

Christina A. BoucheriD· 3 shared Aaron Hong· 1 shared Ayomide Ajayi· 1 shared Daniel Dole-Muinos· 1 shared Darshan Washimkar· 1 shared David A. TallmoniD· 1 shared Isha Yooseph· 1 shared Leena SalmelaiD· 1 shared

Activity by Year

2018-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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3 shared papersBioinformatics

Christina A. BoucherORCID

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3 papers

Recent·Most cited

ONeSAMP 3.0: Effective Population Size via SNP Data for One Population Sample

Aaron Hong, Rebecca G. Cheek, Kingshuk Mukherjee, Isha Yooseph, Marco Oliva, Mark Heim, W. Chris Funk, David A. Tallmon, Christina A. Boucher

ONeSAMP 3.0 estimates genetic effective population size (Ne) from SNP data of a single population using Approximate Bayesian Computation and local linear regression, showing robustness and accuracy in simulated and empirical data.

bioRxiv · Sep 14, 2023 · PreprintBioinformatics

Finding Overlapping Rmaps via Gaussian Mixture Model Clustering

Kingshuk Mukherjee, Massimiliano Rossi, Daniel Dole-Muinos, Ayomide Ajayi, Mattia Prosperi, Christina A. Boucher

The paper introduces a Gaussian mixture model clustering method to find overlapping Rmaps without quantization, improving precision and efficiency in optical mapping analysis.

bioRxiv · Jul 16, 2021 · PreprintBioinformatics

Error Correcting Optical Mapping Data

Kingshuk Mukherjee, Darshan Washimkar, Martin D. Muggli, Leena Salmela, Christina A. Boucher

The paper introduces cOMet, an error correction method for optical mapping data, which improves the accuracy of Rmap data and enhances genome assembly quality.

GigaScience · May 25, 2018Peer-reviewedBioinformatics