Marco Oliva

This paper introduces Re2Pair, a modified RePair algorithm that reduces memory usage and improves speed for compressing large genomic datasets.

ONeSAMP 3.0 estimates genetic effective population size (Ne) from SNP data of a single population using Approximate Bayesian Computation and local linear regression, showing robustness and accuracy in simulated and empirical data.

This paper introduces recursive prefix-free parsing to reduce memory needed for building run-length encoded BWTs, showing effective memory reduction in experiments.

The paper introduces a recursive prefix-free parsing method to improve the efficiency of building pangenome alignment indexes, reducing construction time and memory usage.

MONI is a pangenomics index that efficiently finds maximal exact matches by combining prefix-free parsing with threshold calculation, outperforming existing tools in speed and memory usage.