Jonathan Tuke

The paper uses Exponential Family Random Graph Models to detect and quantify biological kinship networks in ancient human populations.

BREADR estimates genetic relatedness from low-coverage genotype data using Bayesian methods and returns posterior probabilities for different degrees of relatedness.

The paper shows that admixture in modern European genomes has masked over 50 historic hard sweeps, suggesting underappreciation of historical selection in human evolution.

The paper introduces a method to quantify demographic structure in single-copy sequence alignments by analyzing relationships between individuals and genomic positions, and demonstrates its application with empirical data.