Author

Sanjay Kumar Srikakulam

Helmholtz Centre for Infection ResearchORCID 0000-0002-1752-5060Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:variant calling· 2 Research Focus:benchmarking· 1 Organism:E. coli· 1 Research Focus:gene regulatory network inference· 1 Approach:graph neural network· 1 Organism:human· 1 Organism:multiple species· 1

Frequent Co-Authors

Fawaz DabbaghieiD· 2 shared Olga V. KalininaiD· 2 shared Robert BalsiD· 1 shared Sebastian KelleriD· 1 shared Tobias MarschalliD· 1 shared

Activity by Year

2021-2023 · peak 1/yr

Co-Author Collaboration Network

5 top collaborators · 8 mutual co-author links

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2 shared papersBioinformatics

Fawaz DabbaghieORCID

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2 papers

Recent·Most cited

BioinformaticsBioinformatics AdvancesPeer-reviewedJan 1, 2023

PanPA: generation and alignment of panproteome graphs

Fawaz Dabbaghie, Sanjay Kumar Srikakulam, Tobias Marschall, Olga V. Kalinina

PanPA generates and aligns panproteome graphs to improve alignment accuracy in prokaryotic genomes by leveraging amino acid similarity over DNA sequence diversity.

6 citations

E. colimultiple species

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BioinformaticsbioRxivPreprintAug 12, 2021

MetaProFi: A protein-based Bloom filter for storing and querying sequence data for accurate identification of functionally relevant genetic variants

Sanjay Kumar Srikakulam, Sebastian Keller, Fawaz Dabbaghie…·Olga V. Kalinina

MetaProFi is a Bloom filter-based tool that stores and queries sequence data, enabling efficient and accurate identification of functionally relevant genetic variants by supporting amino acid and translated nucleotide sequences.

2 citations

humanwhole-genome sequencing

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