Xianjie Huang

stCNASim is a spatial RNA-seq simulator that benchmarks copy number inference methods in spatial transcriptomics.

Hist2Cell predicts fine-grained transcriptional cell types from histology images with high accuracy, enabling cellular mapping and cancer prognosis.

XClone detects allele-specific copy number alterations from scRNA-seq data by smoothing signals on cell and gene coordinate graphs, enabling robust identification of haplotype-aware CNAs and subclones.

Cellsnp-lite is a fast and memory-efficient tool for genotyping single-cell sequencing data, showing improved performance over existing methods.