Author

Bharath Nair

University of CambridgeORCID 0000-0002-1897-4132Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 4 Assay:proteomics· 4 Approach:statistical model· 3 Research Focus:cell type annotation· 1 Research Focus:deconvolution· 1 Approach:machine learning (classical)· 1 Research Focus:software / tool· 1 Research Focus:spatial domain detection· 1

Frequent Co-Authors

Ismael Rodríguez PalomoiD· 3 shared Matthew J. CollinsiD· 3 shared Yun ChiangiD· 2 shared Benjamin DartiguesiD· 1 shared Bo MarkusseniD· 1 shared Carsten WiufiD· 1 shared Fei YangiD· 1 shared Jesper Velgaard OlseniD· 1 shared

Activity by Year

2023-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

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3 shared papersBioinformatics

Ismael Rodríguez PalomoORCID

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4 papers

Recent·Most cited

BioinformaticsJournal of ProteomicsPeer-reviewedNov 30, 2025

MALDI Deamidation Score (MDS): A Fast and Flexible Method for Assessing Deamidation in ZooMS Data and Its Application to the Denisova Cave Bone Assemblage

Fei Yang, Ismael Rodríguez Palomo, Bharath Nair, Samantha Brown

The paper introduces MDS, a method for assessing deamidation in ZooMS data, demonstrating its application to Denisova Cave bone assemblage to reveal time-varying deamidation patterns across peptides.

2 citations

proteomicsstatistical model

𝕏 PostBluesky

BioinformaticsPeer Community JournalPeer-reviewedNov 21, 2024

Benchmarking the identification of a single degraded protein to explore optimal search strategies for ancient proteins

Ismael Rodríguez Palomo, Bharath Nair, Yun Chiang…·Matthew J. Collins

The paper benchmarks sequencing tools for identifying degraded proteins in ancient samples, finding optimal strategies for peptide and PTM detection.

11 citations

proteomicsstatistical model

𝕏 PostBluesky

BioinformaticsbioRxivPreprintNov 15, 2024

Anubis: a multi-level authentication scale for ancient proteins using random forest classification

Yun Chiang, Bharath Nair, Max Ramsøe…·Matthew J. Collins

Anubis authenticates ancient proteins using deamidation patterns and random forest classification, demonstrating reliability with ancient and degraded beta-lactoglobulin.

3 citations

proteomicsmachine learning (classical)

𝕏 PostBluesky

BioinformaticsPeer Community JournalPeer-reviewedJan 18, 2023

Parchment Glutamine Index (PQI): A novel method to estimate glutamine deamidation levels in parchment collagen obtained from low-quality MALDI-TOF data

Bharath Nair, Ismael Rodríguez Palomo, Bo Markussen…·Matthew J. Collins

The paper introduces a method to estimate glutamine deamidation levels in parchment collagen using low-resolution MALDI-TOF data, finding it useful for archaeological and industrial applications.

16 citationstop 1%

proteomicsstatistical model

𝕏 PostBluesky