Andigoni Malousi

VaccineDesigner: A Web-based Tool for Streamlined Epitope-based Vaccine Design

VaccineDesigner is a web-based tool that streamlines multi-epitope vaccine design by integrating epitope prediction and evaluation methods.

Reliable machine learning models in genomic medicine using conformal prediction

This study explores the use of conformal prediction in genomic medicine to improve the reliability and safety of machine learning models in clinical applications.

Evaluation and optimization of sequence-based gene regulatory deep learning models

The paper evaluates and optimizes sequence-based gene regulatory deep learning models using a DREAM Challenge dataset, showing improvements through architectural and training strategy refinements.

precisionFDA Truth Challenge V2: Calling variants from short- and long-reads in difficult-to-map regions

The paper evaluates variant calling in difficult genomic regions using short- and long-read sequencing, showing improved performance with new methods and multi-technology approaches.