Juhyun Lee

A consensus definition for deep layer 6 excitatory neurons in mouse neocortex

The paper defines deep layer 6 excitatory neurons in mouse neocortex by comparing molecular, transcriptional, morphological, and transgenic approaches, identifying a core population with distinct connectivity and developmental properties.

Volumetric imaging and computation to explore contractile function in zebrafish hearts

The paper develops a framework for real-time volumetric imaging of zebrafish hearts to study contractile dynamics at the cellular level.

Automated cell tracking using 3D nnUnet and Light Sheet Microscopy to quantify regional deformation in zebrafish

This study uses 3D nnUnet and Light Sheet Microscopy to automate cell tracking and quantify myocardial deformation in zebrafish over time.

Evaluation and optimization of sequence-based gene regulatory deep learning models

The paper evaluates and optimizes sequence-based gene regulatory deep learning models using a DREAM Challenge dataset, showing improvements through architectural and training strategy refinements.

Proformer: a hybrid macaron transformer model predicts expression values from promoter sequences

Proformer predicts gene expression from promoter sequences using a hybrid transformer model with improved performance over conventional designs.

Sub-voxel light-sheet microscopy for high-resolution, high-throughput volumetric imaging of large biomedical specimens