Author

Masaaki Shimizu

Institute of Science TokyoORCID 0000-0002-2014-0161Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:benchmarking· 2 Assay:imaging· 2 Research Focus:batch correction / integration· 1 Assay:bulk RNA-seq· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1

Frequent Co-Authors

Akihiro Ninomiya· 1 shared Akira WatanabeiD· 1 shared Daisuke HagiwaraiD· 1 shared Genichi SugiharaiD· 1 shared Haruhisa OhtaiD· 1 shared Hidehiko TakahashiiD· 1 shared Hiroki TakahashiiD· 1 shared Hiroyuki YamaguchiiD· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 14 mutual co-author links

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1 shared paperGenomics

Akihiro Ninomiya

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3 papers

Recent·Most cited

Preserved Intrinsic Neural Timescale Organization with Hierarchical Variation in Autism Spectrum Disorder

Yumi Shikauchi, Ryuta Aoki, Takashi Itahashi, Masaaki Shimizu, Taiga Naoe, Tsukasa Okimura, Haruhisa Ohta, Ryuichiro Hashimoto, Motoaki Nakamura

The paper examines intrinsic neural timescales in autism spectrum disorder and typically developed controls, finding preserved hierarchical organization but individual variability linked to sensory traits.

Cerebral Cortex · Aug 3, 2026Peer-reviewedNeuroscience

Harmonizing Inter-Site Differences in T1-Weighted Images Using CycleGAN

Masaaki Shimizu, Yuichi Yamashita, Hiroyuki Yamaguchi, Naoya Oishi, Hidehiko Takahashi, Genichi Sugihara

This paper compares CycleGAN and ComBat for harmonizing T1-weighted MRI images across sites, finding CycleGAN preserves image quality better with minimal preprocessing.

bioRxiv · Apr 7, 2025 · PreprintNeuroscience

Comparative genome and transcriptome analyses revealing interspecies variations in the expression of fungal biosynthetic gene clusters

Hiroki Takahashi, Myco Umemura, Masaaki Shimizu, Akihiro Ninomiya, Yoko Kusuya, Syun‐ichi Urayama, Akira Watanabe, Katsuhiko Kamei, Takashi Yaguchi, Daisuke Hagiwara

The paper compares genome and transcriptome data from five Aspergillus species to analyze variations in biosynthetic gene cluster expression, finding that conserved clusters show diverse expression patterns despite genetic conservation.

Frontiers in Fungal Biology · Apr 16, 2021Peer-reviewedGenomics