Author

Syun‐ichi Urayama

University of TsukubaORCID 0000-0001-5318-9212Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Research Focus:cell type annotation· 2 Research Focus:clustering· 2 Research Focus:gene regulatory network inference· 2 Assay:metagenomics· 2 Organism:bacteria (other)· 1 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Akihito FukudomeiD· 2 shared Eugene V. KooniniD· 2 shared Mart KrupovìčiD· 2 shared Sofia MedvedevaiD· 2 shared Takuro NunouraiD· 2 shared Yoshihiro TakakiiD· 2 shared Yosuke NishimuraiD· 2 shared Akihiro Ninomiya· 1 shared

Activity by Year

2021-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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2 shared papersMicrobiology

Akihito FukudomeORCID

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3 papers

Recent·Most cited

MicrobiologybioRxivPreprintSep 3, 2025

Identification of Obelisk-like covalently closed circular RNA replicon in hot springs by double-stranded RNA sequencing and expansion of the diversity of the Obelisk superfamily

Syun‐ichi Urayama, Akihito Fukudome, Pascal Mutz…·Takuro Nunoura

The paper identifies a new family of Obelisk-like cccRNAs in hot springs using FLDS, expanding the Obelisk superfamily with structurally similar but sequence-divergent proteins.

4 citations

metagenomicsexperimental assay

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MicrobiologybioRxivPreprintFeb 27, 2025

"Paraxenoviridae", a putative family of ubiquitous marine bacteriophages with double-stranded RNA genomes

Mitsuhiro Yoshida, Sofia Medvedeva, Akihito Fukudome…·Takuro Nunoura

The paper identifies a new family of marine bacteriophages with double-stranded RNA genomes, named Paraxenoviridae, based on genomic and structural analyses.

1 citation

bacteria (other)long-read sequencing

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GenomicsFrontiers in Fungal BiologyPeer-reviewedApr 16, 2021

Comparative genome and transcriptome analyses revealing interspecies variations in the expression of fungal biosynthetic gene clusters

Hiroki Takahashi, Myco Umemura, Masaaki Shimizu…·Daisuke Hagiwara

The paper compares genome and transcriptome data from five Aspergillus species to analyze variations in biosynthetic gene cluster expression, finding that conserved clusters show diverse expression patterns despite genetic conservation.

9 citations

fungi (other)whole-genome sequencing

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