Author

Marcelo A. Navarrete

Universidad de MagallanesORCID 0000-0002-2044-9548Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 3 Pharmacology & Toxicology· 1

Signature Assays, Organisms & Methods

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Research Focus:database / resource· 2 Assay:protein sequence· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Organism:human· 1

Frequent Co-Authors

David Medina-OrtiziD· 3 shared Frédéric CadetiD· 3 shared Nicole Soto-GarcíaiD· 3 shared Roberto Uribe-ParedesiD· 3 shared Jorge González-PuelmaiD· 2 shared Julieta Sepúlveda-YáñeziD· 2 shared Karen OrósticaiD· 2 shared Leandro MurgasiD· 2 shared

Activity by Year

2024-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 41 mutual co-author links

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3 shared papersBioinformatics

David Medina-OrtizORCID

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Author profile →

4 papers

Recent·Most cited

Data-Centric Evaluation of Protein Function Prediction Pipelines

Nicole Soto-García, Norma Murillo-Acevedo, Julián Alfonso García - Vinuesa, Ana Luisa Islas-Ávila, Mehdi D. Davari, Leandro Murgas, Ahmed Hassanin, Karen Oróstica, Jorge González-Puelma, Marcelo A. Navarrete, Alicia Martínez, Roberto Uribe-Paredes, Frédéric Cadet, David Medina-Ortiz

The paper evaluates how data preprocessing steps affect protein function prediction performance using antioxidant protein classification.

bioRxiv · Aug 11, 2026 · PreprintBioinformatics

MAOMAO: An Ontology-Guided FAIR Resource for Harmonized Peptide Toxicity Data

Nicole Soto-García, Roberto Uribe-Paredes, Leandro Murgas, Karen Oróstica, Jorge González-Puelma, Marcelo A. Navarrete, Frédéric Cadet, David Medina-Ortiz

MAOMAO integrates and harmonizes peptide toxicity data from 54 sources to create a FAIR resource with standardized terminology and benchmark partitions for toxicity research.

bioRxiv · Aug 4, 2026 · PreprintPharmacology & Toxicology

CaClust: linking genotype to transcriptional heterogeneity of follicular lymphoma using BCR and exomic variants

Kazimierz Oksza-Orzechowski, Edwin Quinten, Shadi Darvish Shafighi, Szymon M. Kiełbasa, Hugo W van Kessel, Ruben A. L. de Groen, Joost S.P. Vermaat, Julieta Sepúlveda-Yáñez, Marcelo A. Navarrete, Hendrik Veelken, Cornelis A.M. van Bergen, Ewa Szczurek

CaClust integrates exomic, scRNA-seq, and BCR data to infer clone genotypes and cell-to-clone mappings in follicular lymphoma, revealing genotype-phenotype links.

Genome biology · Nov 5, 2024Peer-reviewedBioinformatics

Peptipedia v2.0: A peptide sequence database and user-friendly web platform. A major update

Gabriel Cabas-Mora, Anamaria Sanchez–Daza, Nicole Soto-García, Valentina Garrido, Diego Álvarez-Saravia, Marcelo A. Navarrete, Lindybeth Sarmiento Varón, Julieta Sepúlveda-Yáñez, Mehdi D. Davari, Frédéric Cadet, Álvaro Olivera‐Nappa, Roberto Uribe-Paredes, David Medina-Ortiz

Peptipedia v2.0 expands its peptide database by 45% and integrates machine learning models to annotate peptide sequences with biological activities.

Database · Jan 1, 2024Peer-reviewedBioinformatics