Roberto Uribe-Paredes

SilkRoute provides a reproducible framework for constructing multi-source biomolecular datasets through descriptor-driven workflows.

The paper evaluates how data preprocessing steps affect protein function prediction performance using antioxidant protein classification.

MAOMAO integrates and harmonizes peptide toxicity data from 54 sources to create a FAIR resource with standardized terminology and benchmark partitions for toxicity research.

RUDEUS is a machine learning system that identifies DNA-binding proteins and classifies their DNA interaction type, achieving high precision in both tasks.

Peptipedia v2.0 expands its peptide database by 45% and integrates machine learning models to annotate peptide sequences with biological activities.