Author

Ioanna A. Rota

University of LausanneORCID 0000-0002-2093-2986Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Assay:metabolomics· 1 Approach:statistical model· 1

Frequent Co-Authors

David BarrasiD· 1 shared Denarda Dangaj LanitiiD· 1 shared Dmitriy ZamariniD· 1 shared Flavia De Carlo· 1 shared George CoukosiD· 1 shared María MasidiD· 1 shared Mathieu DesbuissoniD· 1 shared Nicola VanniniiD· 1 shared

Activity by Year

2025-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperSystems Biology

David BarrasORCID

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1 paper

Recent·Most cited

Computational Inference of Metabolic Programs: A Case Study Analyzing the Effect of BRCA1 Loss

María Masid, Ioanna A. Rota, David Barras, Flavia De Carlo, Pierpaolo Ginefra, Mathieu Desbuisson, Yaquelin Ortiz-Miranda, Dmitriy Zamarin, Sohrab P. Shah, Nicola Vannini, George Coukos, Denarda Dangaj Laniti, Vassily Hatzimanikatis A

This study introduces iMSEA, a computational framework that identifies metabolic state shifts in BRCA1-deficient cancers using omics data and validates findings with experimental assays.

bioRxiv · Nov 18, 2025 · PreprintSystems Biology