Author

Yvonne Lee

Northwestern UniversityORCID 0000-0002-2105-3393Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 1 Immunology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:cell type annotation· 2 Research Focus:cell-cell communication· 2 Research Focus:differential expression· 2 Organism:human· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Approach:experimental assay· 1 Assay:spatial transcriptomics· 1

Frequent Co-Authors

Chamith Y. FonsekaiD· 2 shared Ilya KorsunskyiD· 2 shared Kamil SlowikowskiiD· 2 shared Laura T. DonliniD· 2 shared Michael B. BrenneriD· 2 shared Soumya RaychaudhuriiD· 2 shared Vivian P. BykerkiD· 2 shared Aaron Wise· 1 shared

Activity by Year

2018-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersImmunology

Chamith Y. FonsekaORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

ImmunologyScience Translational MedicinePeer-reviewedJun 24, 2026

SPP1hi macrophages in fibrin niches promote hyperplastic tissue remodeling in rheumatoid arthritis synovium

Ian Mantel, Haoxuan Zhang, Juan Vargas…·Thomas Eisenhaure

SPP1hi macrophages in RA synovial fibrin deposits promote tissue hyperplasia.

4 citationstop 1%

humanspatial transcriptomics

𝕏 PostBluesky

BioinformaticsScience Translational MedicinePeer-reviewedOct 17, 2018

Mixed Effects Association of Single Cells Identifies an Expanded Th1-Skewed Cytotoxic Effector CD4+ T Cell Subset in Rheumatoid Arthritis

Chamith Y. Fonseka, Deepak A. Rao, Nikola C. Teslovich…·Soumya Raychaudhuri

The paper introduces MASC, a method to identify disease-associated cell subsets in single-cell data, and finds an expanded Th1-skewed cytotoxic CD4+ T cell subset in rheumatoid arthritis.

177 citationstop 1%

humanbulk RNA-seq

𝕏 PostBluesky