Author

Dimitar Garkov

University of KonstanzORCID 0000-0002-2134-1686Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:batch correction / integration· 1 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Organism:human· 1 Assay:imaging· 1 Research Focus:software / tool· 1 Research Focus:spatial domain detection· 1

Frequent Co-Authors

Falk SchreiberiD· 2 shared Karsten KleiniD· 2 shared Adam T. PiersiD· 1 shared Alex L. JordaniD· 1 shared Björn SommeriD· 1 shared Bronwyn Christiansen· 1 shared Christian DulliniD· 1 shared David A. ElliottiD· 1 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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2 shared papersBioinformatics

Falk SchreiberORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintJun 17, 2025

Brainacle: Interactive delineation and quantification of anatomical structures with virtual reality

Dimitar Garkov, Etienne Lein, Niklas Kielkopf…·Falk Schreiber

Brainacle enables interactive delineation and quantification of anatomical structures in 3D data using virtual reality, validated on brain regions of African cichlid fish.

DOI 10.1101/2025.06.17.659041

zebrafishimaging

BioinformaticsbioRxivPreprintMar 31, 2023

Automated Integration of Multi-Slice Spatial Transcriptomics Data in 2D and 3D

Denis Bienroth, Natalie Charitakis, Dillon Wong…·Mirana Ramialison

VR-Omics automates integration of multi-slice spatial transcriptomics data in 2D and 3D, revealing dysregulated metabolic networks in paediatric cardiac rhabdomyomas.

3 citations

humanspatial transcriptomics