Alberto Santos-Zavaleta

Similarity corpus on microbial transcriptional regulation

The paper creates a similarity corpus for microbial transcriptional regulation sentences, evaluated by curators to aid in biomedical literature curation.

Tracing the phylogenetic history of the Crl regulon through the Bacteria and Archaea genomes.

The paper identifies a comprehensive dataset of Crl-regulated genes in E. coli and traces the evolutionary history of the Crl regulon across archaeal and bacterial taxa.

Towards a unified resource for transcriptional regulation in Escherichia coli K-12: Incorporating high throughput-generated binding data within the classic framework of regulation of initiation of transcription in RegulonDB.

The paper expands RegulonDB to integrate high-throughput binding data with existing knowledge on gene regulation in E. coli K-12, enhancing its comprehensiveness and utility.