Author

Jennifer O. Black

University of Colorado AnschutzORCID 0000-0002-2181-9344Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Organism:human· 1 Approach:large language model· 1

Frequent Co-Authors

Alyaa Al‐IbraheemiiD· 1 shared Ayesha BatooliD· 1 shared Bo YaoiD· 1 shared David Hall· 1 shared Donald A. BarkauskasiD· 1 shared Guanghua XiaoiD· 1 shared Jessica L. DavisiD· 1 shared Jingwei HuangiD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperBioinformatics

Alyaa Al‐IbraheemiORCID

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1 paper

Recent·Most cited

Leveraging Large Language Models to Extract Prognostic Pathology Features in Ewing Sarcoma

Jingwei Huang, Ayesha Batool, Zifan Gu, Zhuo Zhao, Bo Yao, Jennifer O. Black, Jessica L. Davis, Alyaa Al‐Ibraheemi, Steven DuBois, Donald A. Barkauskas, Subhash Ramakrishnan, David Hall, Patrick Joseph Grohar, Yang Xie, Guanghua Xiao, Patrick J. Leavey

This paper uses large language models to extract prognostic histologic features from Ewing sarcoma pathology reports, identifying NSE and S100 as significant biomarkers.

bioRxiv · Mar 19, 2026 · PreprintBioinformatics