Author

Jingwei Huang

The University of Texas Southwestern Medical CenterORCID 0000-0003-2155-6107Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Cancer Biology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Organism:human· 2 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Guanghua XiaoiD· 2 shared Alyaa Al‐IbraheemiiD· 1 shared Ayesha BatooliD· 1 shared Bo YaoiD· 1 shared Bruce A. PosneriD· 1 shared David Hall· 1 shared Deepak NijhawaniD· 1 shared Donald A. BarkauskasiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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2 shared papersBioinformatics

Guanghua XiaoORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintMar 19, 2026

Leveraging Large Language Models to Extract Prognostic Pathology Features in Ewing Sarcoma

Jingwei Huang, Ayesha Batool, Zifan Gu…·Patrick J. Leavey

This paper uses large language models to extract prognostic histologic features from Ewing sarcoma pathology reports, identifying NSE and S100 as significant biomarkers.

DOI 10.64898/2026.02.20.707103

humanbulk RNA-seq

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Cancer BiologybioRxivPreprintMar 31, 2025

Attention Guided Mechanism Interpretable Drug-Gene Interaction (MIDI) Modeling for Cancer Drug Response Prediction and Target Effect Explanation

Tingyi Wanyan, Ling Cai, Deepak Nijhawan…·Yang Xie

This paper introduces MIDI, a model that predicts cancer drug response and explains drug-target interactions using an attention mechanism, outperforming existing methods in prediction and interpretability.

DOI 10.1101/2025.03.31.646490

humanbulk RNA-seq

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