Author
The University of Texas Southwestern Medical CenterORCID 0009-0002-2225-9956Unclaimed ORCID profile · follow to get notified of new preprints
6 papers
Recent·Most cited
Yi Jiang, Xiaowei Zhan, Peiran Quan…·Yang Xie
SpatialOmicsLab provides an integrated environment with AI tools for spatial transcriptomics analysis, outperforming expert workflows in multiple tasks.
Jia Yao, Yuqiu Yang, Y Jiang…·Y D Xie
The paper introduces STORM, a method to identify recurrent spatial motifs in colorectal cancer without cell-type labels, finding a fibroblast barrier linked to immune exclusion and prognosis.
Jingwei Huang, Ayesha Batool, Zifan Gu…·Patrick J. Leavey
This paper uses large language models to extract prognostic histologic features from Ewing sarcoma pathology reports, identifying NSE and S100 as significant biomarkers.
Xi Jiang, Danni Luo, Esteban Fernández…·Yang Xie
STAr provides an integrated platform with curated datasets and methods to evaluate and develop spatial transcriptomics analysis tools.
Shuang Jiang, Guanghua Xiao, Andrew Young Koh…·Xiaowei Zhan
HARMONIES infers sparse microbiome networks using a zero-inflated negative binomial model and regularization, outperforming existing methods and identifying disease-associated microbial communities.
Shidan Wang, Ruichen Rong, Donghan M. Yang…·Guanghua Xiao
The paper develops a deep learning tool to analyze pathology images and identify TME features predictive of survival in lung cancer.