Author

Caroline H. Shiboski

University of California, San FranciscoORCID 0000-0002-2289-3781Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genetics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Approach:statistical model· 2 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Kimberly E. TayloriD· 2 shared Lindsey A. CriswelliD· 2 shared Albin BjörkiD· 1 shared Alexis J. CombesiD· 1 shared Amy Darise FarrisiD· 1 shared Anna M. StolarczykiD· 1 shared Annie W. Poon· 1 shared Armita Norouzi· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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2 shared papersGenetics

Kimberly E. TaylorORCID

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2 papers

Recent·Most cited

Variants in the DDX6-CXCR5 autoimmune disease risk locus influence the regulatory network in immune cells and salivary gland

Mandi M. Wiley, Marcin Radziszewski, Bhuwan Khatri, Michelle L. Joachims, Kandice L. Tessneer, Anna M. Stolarczyk, Songyuan Yao, James Li, C. Pritchett Frazee, Audrey A. Johnston, Astrid Rasmussen, Juan‐Manuel Anaya, Lara A. Aqrawi, Sang‐Cheol Bae, Eva Baecklund, , Christopher J. Lessard

The paper identifies five SNPs in the DDX6-CXCR5 locus associated with autoimmune diseases and shows their functional effects on gene regulation in immune and epithelial cells.

Annals of the Rheumatic Diseases · May 29, 2025Peer-reviewedGenetics

Single-cell RNA sequencing of peripheral blood defines two immunological subtypes of Sjögren's disease

G. Urbanski, Kimberly E. Taylor, Emily Flynn, Armita Norouzi, Catherine Chu, Brittany R. Davidson, Arnab Ghosh, Joanne Nititham, Ravi K. Patel, Annie W. Poon, Gabriela K. Fragiadakis, Alexis J. Combes, Walter L. Eckalbar, Lindsey A. Criswell, Chun Ye, Caroline H. Shiboski

The paper identifies two immunological subtypes of Sjögren's disease using single-cell RNA sequencing, highlighting distinct IFN-I signatures and transitional B cell characteristics.

bioRxiv · Feb 27, 2025 · PreprintGenomics