Author

Ahmed Ibrahem Hafez

Universitat de ValènciaORCID 0000-0002-2343-5029Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Approach:Bayesian inference· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Assay:long-read sequencing· 1

Frequent Co-Authors

Carlos LlorénsiD· 3 shared Beatriz SorianoiD· 2 shared Fernando Naya-CatalàiD· 2 shared Jaume Pérez‐SáncheziD· 2 shared María Carla PiazzoniD· 2 shared Toni GabaldóniD· 2 shared Ariadna Sitjà‐BobadillaiD· 1 shared Ester SausiD· 1 shared

Activity by Year

2018-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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3 shared papersGenomics

Carlos LlorénsORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

BioinformaticsGenesPeer-reviewedAug 19, 2023

SAMBA: Structure-Learning of Aquaculture Microbiomes Using a Bayesian Approach

Beatriz Soriano, Ahmed Ibrahem Hafez, Fernando Naya-Català…·Jaume Pérez‐Sánchez

SAMBA models fish gut microbiome interactions using Bayesian networks to infer how farming conditions affect microbiome diversity and predict changes under experimental variables.

20 citations

metagenomicsBayesian inference

𝕏 PostBluesky

GenomicsbioRxivPreprintSep 19, 2019

Genome Sequencing and Transcriptome Analysis Reveal Recent Species-specific Gene Duplications in the Plastic Gilthead Sea Bream

Jaume Pérez‐Sánchez, Fernando Naya-Català, Beatriz Soriano…·Josep À. Calduch-Giner

The paper reports genome sequencing and transcriptome analysis of gilthead sea bream, identifying recent species-specific gene duplications linked to adaptation and immune function.

1 citation

non-human primatewhole-genome sequencing

𝕏 PostBluesky

GenomicsRNAPeer-reviewedJan 22, 2018

nextPARS: Parallel probing of RNA structures in Illumina

Ester Saus, Jesse R. Willis, Leszek P. Pryszcz…·Toni Gabaldón

nextPARS is an Illumina-based method for parallel RNA structure probing that matches previous accuracy while improving throughput and sample multiplexing.

24 citations

long-read sequencingexperimental assay

𝕏 PostBluesky