Author

Anthony Sonrel

SIB Swiss Institute of BioinformaticsORCID 0000-0002-2414-715XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 3 Approach:benchmark study· 2 Assay:scRNA-seq· 2 Approach:statistical model· 2 Research Focus:batch correction / integration· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:machine learning (classical)· 1

Frequent Co-Authors

Mark D. RobinsoniD· 2 shared Pierre‐Luc GermainiD· 2 shared Ahmad Al-AjamiiD· 1 shared Albert S. W. KangiD· 1 shared Alice Julien-LaferrièreiD· 1 shared Almut LuetgeiD· 1 shared Charlotte SonesoniD· 1 shared Dominique Paul· 1 shared

Activity by Year

2020-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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2 shared papersBioinformatics

Mark D. RobinsonORCID

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintSep 22, 2022

Meta-analysis of (single-cell method) benchmarks reveals the need for extensibility and interoperability

Anthony Sonrel, Almut Luetge, Charlotte Soneson…·Mark D. Robinson

This paper meta-analyzes single-cell method benchmarks to identify challenges in extensibility, interoperability, and reproducibility.

4 citations

statistical modelbenchmark study

𝕏 PostBluesky

BioinformaticsNAR Genomics and BioinformaticsPeer-reviewedOct 4, 2021

Besca, a single-cell transcriptomics analysis toolkit to accelerate translational research

Sophia Clara Mädler, Alice Julien-Laferrière, Luis Wyss…·Klas Hatje

Besca is a toolkit that streamlines scRNA-seq analysis with quality control, clustering, cell annotation, and bulk transcriptomics integration across datasets.

26 citations

scRNA-seqstatistical model

𝕏 PostBluesky

BioinformaticsGenome biologyPeer-reviewedSep 1, 2020

pipeComp, a general framework for the evaluation of computational pipelines, reveals performant single-cell RNA-seq preprocessing tools

Pierre‐Luc Germain, Anthony Sonrel, Mark D. Robinson

pipeComp evaluates scRNA-seq pipelines using simulated and real data to identify efficient preprocessing tools and recommend comprehensive analysis workflows.

148 citationstop 3%

scRNA-seqbenchmark study

𝕏 PostBluesky