Author

Deyvid Amgarten

Universidade de São PauloORCID 0000-0002-2612-5990Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Assay:whole-genome sequencing· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Approach:deep learning· 1 Assay:DNA methylation· 1 Approach:statistical model· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Alexandre Rodrigues MarraiD· 1 shared Aline Maria da SilvaiD· 1 shared Anderson Alves Schinaid· 1 shared Bruno Koshin Vázquez IhaiD· 1 shared Carlos Morais PiroupoiD· 1 shared Fernanda de Mello MaltaiD· 1 shared João Carlos SetúbaliD· 1 shared João Renato Rebello PinhoiD· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

8 top collaborators · 12 mutual co-author links

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1 shared paperBioinformatics

Alexandre Rodrigues MarraORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintJul 16, 2026

Genomic foundation model embeddings encode higher-order viral genome architecture beyond sequence composition: a benchmark of Evo 2

Deyvid Amgarten, Anderson Alves Schinaid, Fernanda de Mello Malta…·João Renato Rebello Pinho

This paper benchmarks Evo 2's ability to encode viral genome architecture, finding it captures higher-order features beyond sequence composition.

DOI 10.64898/2026.07.14.738542

DNA methylationwhole-genome sequencing

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BioinformaticsPHAGEPeer-reviewedAug 29, 2022

vHULK, a new tool for bacteriophage host prediction based on annotated genomic features and deep neural networks

Deyvid Amgarten, Bruno Koshin Vázquez Iha, Carlos Morais Piroupo…·João Carlos Setúbal

vHULK predicts bacteriophage hosts using genomic features and deep neural networks, achieving high accuracy in genus and species-level classifications.

48 citationstop 3%

bacteria (other)whole-genome sequencing

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