João Carlos Setúbal

This study compares HPV16 and HPV18 cervical cancers using gene expression data to identify genotype-specific host pathway alterations and viral gene expression programs.

This study identifies PARG activity as essential for parthanatos cell death, showing that both PAR formation and hydrolysis are required, and reveals a new PARG splice variant.

This paper presents the structural and functional analysis of {Phi}Xacm4-11, a phage infecting Xanthomonas citri, revealing its architecture and host recognition mechanisms.

The paper identifies a VEGF-independent gene signature for HER2+ breast cancer using RNA network analysis and validates its prognostic value in a breast cancer cohort.

This study uses nanopore sequencing to analyze microbial diversity in three Brazilian Atlantic Rainforest ponds, revealing distinct community structures and functional profiles.

CAMP provides a modular metagenomics analysis system that enables scalable, extensible workflows with integrated data visualization and reporting.

vHULK predicts bacteriophage hosts using genomic features and deep neural networks, achieving high accuracy in genus and species-level classifications.

This paper compares 94 Xylella fastidiosa genomes to identify host-specificity determinants and expand knowledge of its mobile genetic elements, particularly prophages.

The paper analyzes M. bovis genomes to identify four global lineages and traces their evolutionary history and geographic dispersal.

The paper introduces a pan-synteny graph method for analyzing multiple prokaryotic genomes, enabling the identification of genomic changes and conservation patterns without a reference genome.