Andre Ferreira Cunha

The paper uses graph neural networks to interpret microbial association patterns in IBD, showing that coordinated associations, not just abundance shifts, are predictive.

This study compares HPV16 and HPV18 cervical cancers using gene expression data to identify genotype-specific host pathway alterations and viral gene expression programs.

ABaCo integrates metagenomic data from multiple studies, corrects technical heterogeneity, and outperforms existing methods while preserving biological signals.