Author

María Barranco-Altirriba

Technical University of DenmarkORCID 0000-0002-1525-210XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Research Focus:differential expression· 2 Research Focus:cell-cell communication· 1 Approach:deep learning· 1 Research Focus:drug response / drug discovery· 1 Research Focus:gene regulatory network inference· 1 Approach:graph neural network· 1 Organism:human· 1

Frequent Co-Authors

Alberto SantosiD· 1 shared Alexandre Perera-LlunaiD· 1 shared Andre Ferreira CunhaiD· 1 shared Edir VidaliD· 1 shared Enrico ManziniiD· 1 shared Helder Imoto NakayaiD· 1 shared Josch Konstantin PaulingiD· 1 shared Juliana Assis GeraldoiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperBioinformatics

Alberto SantosORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintNov 1, 2026

Interpreting graph neural networks reveals microbial association patterns in inflammatory bowel diseases

Andre Ferreira Cunha, Edir Vidal, María Barranco-Altirriba…·Alberto Santos

The paper uses graph neural networks to interpret microbial association patterns in IBD, showing that coordinated associations, not just abundance shifts, are predictive.

DOI 10.64898/2026.10.27.762128

humanmetagenomics

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BioinformaticsbioRxivPreprintOct 31, 2024

Smile-to-Bert: a pre-trained Transformer model for molecular property prediction using SMILES representations

María Barranco-Altirriba, Vivian Würf, Enrico Manzini…·Alexandre Perera-Lluna

The paper introduces Smile-to-Bert, a pre-trained BERT model for predicting molecular properties from SMILES strings, showing improved performance on several datasets.

1 citation

deep learningtransformer / foundation model

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