Author

Gabino F. Sanchez‐Perez

Wageningen University & ResearchORCID 0000-0002-2692-9892Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Assay:whole-genome sequencing· 3 Research Focus:genome assembly· 2 Research Focus:variant calling· 2 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Research Focus:deconvolution· 1 Assay:Hi-C· 1

Frequent Co-Authors

Elio G. W. M. SchijleniD· 3 shared Henri van de GeestiD· 3 shared Dick de RidderiD· 2 shared Bas te Lintel Hekkert· 1 shared Eddy J. SmidiD· 1 shared Florian MaumusiD· 1 shared Irma M.H. van RijswijckiD· 1 shared James J. GiovannoniiD· 1 shared

Activity by Year

2018-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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3 shared papersGenomics

Elio G. W. M. SchijlenORCID

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3 papers

Recent·Most cited

BioinformaticsPLoS ONEPeer-reviewedSep 30, 2021

Signal-based optical map alignment

Mehmet Akdel, Henri van de Geest, Elio G. W. M. Schijlen…·Dick de Ridder

This paper introduces two open-source tools for processing and aligning optical mapping data to improve genome assembly and data utilization.

2 citations

whole-genome sequencingexperimental assay

𝕏 PostBluesky

GenomicsbioRxivPreprintSep 14, 2019

✦ In-depth digest

An improved de novo assembly and annotation of the tomato reference genome using single-molecule sequencing, Hi-C proximity ligation and optical maps

Prashant S. Hosmani, Mirella Flores-Gonzalez, Henri van de Geest…·Surya Saha

A PacBio and Hi-C tomato genome rebuild shrinks gaps from 81.71Mb to 44Kb; the matching ITAG4.0 annotation adds 4,794 genes and updates most carried-over models.

289 citations

plant (other)long-read sequencing

𝕏 PostBluesky

GenomicsBMC GenomicsPeer-reviewedNov 6, 2018

Correcting palindromes in long reads after whole-genome amplification

Sven Warris, Elio G. W. M. Schijlen, Henri van de Geest…·Dick de Ridder

Pacasus corrects artificial palindromic errors in long reads after whole-genome amplification, improving mapping and assembly results.

20 citations

whole-genome sequencingexperimental assay

𝕏 PostBluesky