Author

Philip T. McGilvray

University of ChicagoORCID 0000-0002-2693-0076Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Approach:machine learning (classical)· 1 Assay:proteomics· 1 Research Focus:software / tool· 1 Approach:statistical model· 1

Frequent Co-Authors

Alma L. BurlingameiD· 1 shared Clinton YuiD· 1 shared Fenglong JiaoiD· 1 shared Lan HuangiD· 1 shared Michael J. TrnkaiD· 1 shared Peter R. BakeriD· 1 shared Robert J. ChalkleyiD· 1 shared Robert J. KeenaniD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

Co-Author Collaboration Network

8 top collaborators · 28 mutual co-author links

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1 shared paperBioinformatics

Alma L. BurlingameORCID

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1 paper

Recent·Most cited

Optimization of Search and Acquisition Strategies for DSSO Crosslinking Mass Spectrometry using Protein Prospector and Touchstone.

Michael J. Trnka, Clinton Yu, Peter R. Baker, Philip T. McGilvray, Fenglong Jiao, Robert J. Keenan, Alma L. Burlingame, Robert J. Chalkley, Lan Huang

The paper evaluates DSSO crosslinking strategies using Protein Prospector and Touchstone, finding that DSSO's advantage comes from backbone fragmentation, not diagnostic ions, and that MS3 is better for proteome-scale samples.

bioRxiv · Oct 15, 2026 · PreprintBioinformatics