Author

Indrajit Deb

University of CalcuttaORCID 0000-0002-2722-582XUnclaimed ORCID profile · follow to get notified of new preprints

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Indrajit Deb1 paper

Biology Disciplines

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Bioinformatics· 1 Biophysics· 1

Signature Assays, Organisms & Methods

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Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:chromatin & epigenetic regulation· 1 Approach:mechanistic / dynamical model· 1 Research Focus:protein folding & dynamics· 1 Approach:statistical model· 1

Frequent Co-Authors

Ansuman LahiriiD· 1 shared Jayaraman ThangappaniD· 1 shared Joanna SarzyńskaiD· 1 shared Mandar KulkarniiD· 1 shared Nivedita DuttaiD· 1 shared Sangwook WuiD· 1 shared

Activity by Year

2023-2024 · peak 1/yr

Co-Author Collaboration Network

6 top collaborators · 6 mutual co-author links

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1 shared paperBiophysics

Ansuman LahiriORCID

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2 papers

Recent·Most cited

BiophysicsbioRxivPreprintSep 20, 2024

Structural and dynamic consequences of inosine, 2'-O-methylation, and N6-methyladenosine modifications in RNA G-quadruplex: A molecular dynamics study

Nivedita Dutta, Indrajit Deb, Joanna Sarzyńska, Ansuman Lahiri

This study investigates how RNA modifications affect G-quadruplex structure using molecular dynamics simulations, revealing dynamic and energetic changes in inter-quadruplex interactions.

DOI 10.1101/2024.09.20.614213

mechanistic / dynamical modelprotein folding & dynamics

𝕏 PostBluesky

BioinformaticsPLoS ONEPeer-reviewedSep 1, 2023

Comparative Analysis of RNA Secondary Structure Accuracy on Predicted RNA 3D Models

Mandar Kulkarni, Jayaraman Thangappan, Indrajit Deb, Sangwook Wu

This study benchmarks 3D RNA structure prediction methods using 2D structure predictions, finding that conformational sampling methods are less dependent on 2D accuracy.

7 citations

statistical modelbenchmark study

𝕏 PostBluesky