Author

Mandar Kulkarni

Agency for Science, Technology and ResearchORCID 0000-0002-9005-9553Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:statistical model· 2 Approach:benchmark study· 1 Approach:deep learning· 1 Assay:protein structure· 1 Research Focus:protein structure prediction· 1

Frequent Co-Authors

Indrajit DebiD· 1 shared Ivona MartinovićiD· 1 shared Jayaraman ThangappaniD· 1 shared Li LiangiD· 1 shared Mile ŠikićiD· 1 shared Roland G. HuberiD· 1 shared Sangwook WuiD· 1 shared Yinghua YaoiD· 1 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 18 mutual co-author links

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1 shared paperBioinformatics

Indrajit DebORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintAug 7, 2025

HomRank: Homogeneous RNA Ranking for 3D Structure Evaluation

Li Liang, Yinghua Yao, Ivona Martinović…·Mile Šikić

The paper introduces HomRank, a ranking method for RNA 3D structure assessment that improves accuracy over existing methods on benchmark datasets.

DOI 10.1101/2025.08.07.669087

protein structuredeep learning

𝕏 PostBluesky

BioinformaticsPLoS ONEPeer-reviewedSep 1, 2023

Comparative Analysis of RNA Secondary Structure Accuracy on Predicted RNA 3D Models

Mandar Kulkarni, Jayaraman Thangappan, Indrajit Deb, Sangwook Wu

This study benchmarks 3D RNA structure prediction methods using 2D structure predictions, finding that conformational sampling methods are less dependent on 2D accuracy.

7 citations

statistical modelbenchmark study

𝕏 PostBluesky