Author

Axel Soto‐Serrano

University of CopenhagenORCID 0000-0002-2805-4209Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Organism:bacteria (other)· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:gene regulatory network inference· 1 Assay:long-read sequencing· 1 Assay:metagenomics· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Łukasz KrychiD· 2 shared Paulina DeptulaiD· 2 shared Wenwen LiiD· 2 shared Alexey I. FomenkoviD· 1 shared Eoghan ReillyiD· 1 shared Farhad M. PanahiD· 1 shared Hui YaniD· 1 shared Jennifer MahonyiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersMicrobiology

Łukasz KrychORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

Multilayer analysis reveals extensive hidden population complexity in a dairy starter microbiome comprising few species

Axel Soto‐Serrano, Eoghan Reilly, Kelsey White, Wenwen Li, Shirin Safaeian, Jennifer Mahony, Paulina Deptula, Łukasz Krych

The paper analyzes a dairy starter microbiome with low species richness using genomic and metagenomic data to reveal hidden population complexity and phage resilience.

bioRxiv · Oct 10, 2026 · PreprintMicrobiology

Matching Excellence: ONT's Rise to Parity with PacBio in Genome Reconstruction of Non-Model Bacterium with High GC Content

Axel Soto‐Serrano, Wenwen Li, Farhad M. Panah, Hui Yan, Pablo Atienza, Alexey I. Fomenkov, Richard J. Roberts, Paulina Deptula, Łukasz Krych

This study compares ONT and PacBio sequencing for genome reconstruction of high GC content bacteria, finding ONT can achieve high-quality genomes without hybridization.

bioRxiv · Feb 26, 2024 · PreprintGenomics