Author

Pablo Atienza

Institute for Integrative Systems Biology (I2SysBio), CSIC - University of ValenciaORCID 0009-0002-1093-693XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:variant calling· 2 Organism:bacteria (other)· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Assay:long-read sequencing· 1

Frequent Co-Authors

Alexey I. FomenkoviD· 1 shared Ana ConesaiD· 1 shared Axel Soto‐SerranoiD· 1 shared Farhad M. PanahiD· 1 shared Hui YaniD· 1 shared Łukasz KrychiD· 1 shared Paulina DeptulaiD· 1 shared Richard J. RobertsiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 28 mutual co-author links

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1 shared paperGenomics

Alexey I. FomenkovORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

SQANTI-evidence: isoform-resolved, evidence-tiered structural annotation of unannotated genomes from long-read RNA-seq

Pablo Atienza Lopez, Ana Conesa

SQANTI-evidence annotates genomes from long-read RNA-seq without a reference, achieving high precision in gene and isoform prediction across species.

bioRxiv · Nov 4, 2026 · PreprintBioinformatics

Matching Excellence: ONT's Rise to Parity with PacBio in Genome Reconstruction of Non-Model Bacterium with High GC Content

Axel Soto‐Serrano, Wenwen Li, Farhad M. Panah, Hui Yan, Pablo Atienza, Alexey I. Fomenkov, Richard J. Roberts, Paulina Deptula, Łukasz Krych

This study compares ONT and PacBio sequencing for genome reconstruction of high GC content bacteria, finding ONT can achieve high-quality genomes without hybridization.

bioRxiv · Feb 26, 2024 · PreprintGenomics