Łukasz Krych

The paper analyzes a dairy starter microbiome with low species richness using genomic and metagenomic data to reveal hidden population complexity and phage resilience.

This paper introduces a high-throughput sequencing method using Oxford Nanopore Technologies to sequence over 1,200 gut microbiome samples with near-full-length 16S rRNA gene amplicons, achieving high accuracy and scalability.

The paper introduces LACA, a de novo clustering workflow for long-read amplicons that improves phylogenetic analysis and phenotype characterization in microbiome data.

This study isolates and characterizes virulent bacteriophages targeting Enterobacteriaceae from preterm piglets with NEC-like inflammation, showing their potential for phage therapy.

This paper introduces a single-stranded library preparation method for virome characterization, showing improved accuracy and reduced bias compared to existing methods.

This study compares ONT and PacBio sequencing for genome reconstruction of high GC content bacteria, finding ONT can achieve high-quality genomes without hybridization.