Author

José A. F. Assumpção

Georgia Institute of TechnologyORCID 0000-0002-2836-1583Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Organism:mouse· 1 Assay:spatial transcriptomics· 1 Approach:statistical model· 1

Frequent Co-Authors

Charmy J Patel· 1 shared Daryll A. VanoveriD· 1 shared Elex S. HarrisiD· 1 shared Hannah E. PeckiD· 1 shared Heather PathakiD· 1 shared James R RoseiD· 1 shared Loren E. SasseriD· 1 shared Philip J. SantangeloiD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

Co-Author Collaboration Network

8 top collaborators · 28 mutual co-author links

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1 shared paperBioinformatics

Charmy J Patel

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1 paper

Recent·Most cited

CRISP enables comparisons of image-based spatial transcriptomicsegmentation quality across ten organs

James R Rose, Elex S. Harris, José A. F. Assumpção, Heather Pathak, Hannah E. Peck, Loren E. Sasser, Charmy J Patel, Daryll A. Vanover, Philip J. Santangelo

The paper benchmarks cell segmentation algorithms for spatial transcriptomics across ten mouse tissues, finding a tradeoff between transcript capture and cell purity, with Proseg performing best overall.

bioRxiv · Apr 21, 2026 · PreprintBioinformatics