Author

Fadi G. Alnaji

Agency for Science, Technology and ResearchORCID 0000-0002-2893-9832Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Microbiology· 2

Signature Assays, Organisms & Methods

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Organism:virus· 2 Assay:bulk RNA-seq· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Approach:statistical model· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Christopher B. BrookeiD· 2 shared Brigitte E. Martin· 1 shared C.A. Lee· 1 shared Chris Fields· 1 shared Daryl Zheng Hao Aw· 1 shared Gloria Rendon· 1 shared J. Cristobal Vera· 1 shared Jessica R. Holmes· 1 shared

Activity by Year

2018-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersMicrobiology

Christopher B. BrookeORCID

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2 papers

Recent·Most cited

Longitudinal analysis of influenza A virus deletion-containing viral genomes reveals key determinants of co-evolutionary dynamics and interference

Fadi G. Alnaji, Mireille Farjo, Shu Ling Goh, Daryl Zheng Hao Aw, Paolo Alberto Lorenzini, Tongyu Liu, Rebekah Chan Lin-Zhen, C.A. Lee, Marco Vignuzzi, Christopher B. Brooke

This study analyzes influenza A virus deletion-containing genomes over time, finding that specific mutations enhance their replication and interference while being lethal in wild-type backgrounds.

Nature Communications · Jun 16, 2026Peer-reviewedMicrobiology

Illumina-based sequencing framework for accurate detection and mapping of influenza virus defective interfering particle-associated RNAs

Fadi G. Alnaji, Jessica R. Holmes, Gloria Rendon, J. Cristobal Vera, Chris Fields, Brigitte E. Martin, Christopher B. Brooke

The paper develops an Illumina-based sequencing framework and pipeline to accurately detect and map influenza virus DIP-associated RNAs, demonstrating its reliability through simulated and experimental data.

bioRxiv · Oct 11, 2018 · PreprintMicrobiology