Meiling Zou

Creator 1.0: Phylogeny-Guided Stagewise Pretraining for Plant Genome Foundation Models across 1,000 Species

Creator 1.0 is a plant genome foundation model pretrained on 1,000 species using phylogeny-guided stagewise pretraining, achieving strong performance on plant-related tasks.

PlantAI: A Multi-Agent System for Plant Functional Genomics Analysis and Biological Knowledge Interpretation

PlantAI integrates bioinformatics analysis and knowledge interpretation for plant functional genomics, achieving high recall and accuracy in literature-based evidence retrieval.

OryzaG3: A Single-species Genomic Foundation Model Pretrained on Rice Pangenome

OryzaG3 is a rice-specific DNA language model pretrained on a pangenome, achieving competitive performance on a genomic benchmark while improving inference efficiency.

Pan-genome and Haplotype Map of Cultivars and Their Wild Ancestors Provides Insights into Adaptive Evolution of Cassava (Manihot esculenta Crantz)

The paper constructs nearly T2T genomes and a pan-genome of cassava cultivars and wild ancestors, revealing domestication genes and evolutionary insights.