Author

Patrick J. Monnahan

University of MinnesotaORCID 0000-0002-3022-8191Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genetics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Organism:plant (other)· 3 Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Research Focus:gene regulatory network inference· 2 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

John K. KellyiD· 2 shared Alex B. BrohammeriD· 1 shared Andrea L. SweigartiD· 1 shared Benjamin K. BlackmaniD· 1 shared Candice N. HirschiD· 1 shared Christine L. O’ConnoriD· 1 shared Jean‐Michel MichnoiD· 1 shared Lex FlageliD· 1 shared

Activity by Year

2017-2020 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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2 shared papersGenetics

John K. KellyORCID

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Author profile →

3 papers

Recent·Most cited

Using multiple reference genomes to identify and resolve annotation inconsistencies

Patrick J. Monnahan, Jean‐Michel Michno, Christine L. O’Connor, Alex B. Brohammer, Nathan M. Springer, Suzanne E. McGaugh, Candice N. Hirsch

The paper identifies and resolves split-gene misannotations across multiple maize reference genomes using RNAseq data and a simulation framework.

BMC Genomics · Apr 7, 2020Peer-reviewedBioinformatics

A synthesis of mapping experiments reveals extensive genomic structural diversity in the Mimulus guttatus species complex

Lex Flagel, Benjamin K. Blackman, Lila Fishman, Patrick J. Monnahan, Andrea L. Sweigart, John K. Kelly

The paper develops a statistical method to detect genomic structural variation using genetic mapping data from Mimulus guttatus crosses, correcting reference genome errors and identifying chromosomal inversions.

PLoS Computational Biology · Apr 15, 2019Peer-reviewedGenetics

The genomic architecture of flowering time varies across space and time in Mimulus guttatus

Patrick J. Monnahan, John K. Kelly

This study maps flowering time loci in Mimulus guttatus across space and time, finding significant genetic variation and genotype-by-environment interactions.

Genetics · Apr 28, 2017Peer-reviewedGenomics