Author

Alex B. Brohammer

University of MinnesotaORCID 0000-0002-4639-4119Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 3 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Research Focus:gene regulatory network inference· 3 Assay:bulk RNA-seq· 2 Research Focus:database / resource· 2 Organism:plant (other)· 2 Assay:whole-genome sequencing· 2 Organism:zebrafish· 2 Research Focus:benchmarking· 1

Frequent Co-Authors

Candice N. HirschiD· 4 shared Nathan M. SpringeriD· 3 shared Cory D. HirschiD· 2 shared Peng ZhouiD· 2 shared Suzanne E. McGaughiD· 2 shared Anna LipzeniD· 1 shared Brieanne VaillancourtiD· 1 shared C. Robin BuelliD· 1 shared

Activity by Year

2018-2020 · peak 2/yr

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10 top collaborators · 34 mutual co-author links

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4 shared papersGenomics

Candice N. HirschORCID

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4 papers

Recent·Most cited

Using multiple reference genomes to identify and resolve annotation inconsistencies

Patrick J. Monnahan, Jean‐Michel Michno, Christine L. O’Connor, Alex B. Brohammer, Nathan M. Springer, Suzanne E. McGaugh, Candice N. Hirsch

The paper identifies and resolves split-gene misannotations across multiple maize reference genomes using RNAseq data and a simulation framework.

BMC Genomics · Apr 7, 2020Peer-reviewedBioinformatics

Transposable elements contribute to dynamic genome content in maize

Sarah N. Anderson, Michelle C. Stitzer, Alex B. Brohammer, Peng Zhou, Jaclyn M Noshay, Christine H. O’Connor, Cory D. Hirsch, Jeffrey Ross‐Ibarra, Candice N. Hirsch, Nathan M. Springer

The paper identifies variable transposable element (TE) insertions across four maize genomes, showing their role in genome organization and gene content variation.

The Plant Journal · Aug 5, 2019Peer-reviewedGenomics

Highly Genotype- and Tissue-specific Single-Parent Expression Drives Dynamic Gene Expression Complementation in Maize Hybrids

Zhi Li, Peng Zhou, Rafael Della Coletta, Tifu Zhang, Alex B. Brohammer, Brieanne Vaillancourt, Anna Lipzen, Chris G. Daum, Kerrie Barry, Natalia de León, Cory D. Hirsch, C. Robin Buell, Shawn M. Kaeppler, Nathan M. Springer, Candice N. Hirsch

The paper analyzes gene expression in maize hybrids and inbreds to show that single-parent expression is genotype- and tissue-specific, with implications for heterosis.

bioRxiv · Jun 12, 2019 · PreprintGenomics

Tandem Duplicate Genes in Maize are Abundant and Date to Two Distinct Periods of Time

Thomas J. Y. Kono, Alex B. Brohammer, Suzanne E. McGaugh, Candice N. Hirsch

The paper identifies thousands of tandem duplicate genes in maize, showing they are abundant and date to two distinct periods of genomic instability.

G3 Genes Genomes Genetics · Jul 20, 2018Peer-reviewedGenomics