Author

Yuying Shi

Shandong UniversityORCID 0000-0002-3048-7871Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:metabolomics· 2 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Organism:mouse· 1 Organism:rat· 1 Approach:statistical model· 1

Frequent Co-Authors

Cheng WangiD· 2 shared Botao Xu· 1 shared Chuang Yuan· 1 shared Gary J. PattiiD· 1 shared Jie ChaiiD· 1 shared Qingzhen HouiD· 1 shared Qitao CheniD· 1 shared Ranran CheniD· 1 shared

Activity by Year

2023-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersBioinformatics

Cheng WangORCID

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2 papers

Recent·Most cited

PhenoMultiOmics: an enzymatic reaction inferred multi-omics network visualization web server

Yuying Shi, Botao Xu, Zhe Wang, Qitao Chen, Jie Chai, Cheng Wang

PhenoMultiOmics visualizes multi-omics networks around enzymatic reactions in cancer, revealing disrupted pathways and biomarkers through curated databases and analysis modules.

Bioinformatics · Oct 16, 2024Peer-reviewedBioinformatics

Genome-scale enzymatic reaction prediction by variational graph autoencoders

Cheng Wang, Chuang Yuan, Yahui Wang, Ranran Chen, Yuying Shi, Gary J. Patti, Qingzhen Hou

The paper introduces MPI-VGAE, a framework for predicting metabolite-protein interactions across organisms, showing improved performance in reconstructing metabolic pathways and disease-specific networks.

bioRxiv · Mar 8, 2023 · PreprintBioinformatics