Author

Zilin Song

Westlake UniversityORCID 0000-0002-3127-3971Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Assay:protein structure· 2 Research Focus:protein structure prediction· 2 Research Focus:software / tool· 1 Approach:statistical model· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

Jing HuangiD· 2 shared Rui ZhaniD· 1 shared Runtong QianiD· 1 shared Tengyu XieiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

4 top collaborators · 4 mutual co-author links

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2 shared papersBiophysics

Jing HuangORCID

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2 papers

Recent·Most cited

BiophysicsbioRxivPreprintApr 27, 2026

Zero-Shot Generation of Protein Conformational Ensembles Through AlphaFold Latent Flooding

Runtong Qian, Rui Zhan, Zilin Song, Jing Huang

This paper introduces AFLF, a method to generate diverse protein conformations from sequence using AlphaFold's latent space, showing it captures structural fluctuations and binding sites.

DOI 10.64898/2026.04.16.718914

protein structuredeep learning

𝕏 PostBluesky

BioinformaticsPRX LifePeer-reviewedOct 4, 2024

Conditioned Protein Structure Prediction

Tengyu Xie, Zilin Song, Jing Huang

AFEXplorer improves protein structure prediction by incorporating user-defined constraints, enhancing the generation of functional conformations.

16 citations

protein structuredeep learning

𝕏 PostBluesky