Author

Chisato Shimizu

University of California San DiegoORCID 0000-0002-3149-2699Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Organism:human· 2 Assay:proteomics· 2 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:machine learning (classical)· 1 Approach:statistical model· 1

Frequent Co-Authors

Adriana H. TremouletiD· 2 shared Jane C. BurnsiD· 2 shared Jihoon KimiD· 2 shared Adam M. ThorneiD· 1 shared Andrew BlissiD· 1 shared Andrew James McArdleiD· 1 shared Climent Casals‐PascualiD· 1 shared Conor LoyiD· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersGenomics

Adriana H. TremouletORCID

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2 papers

Recent·Most cited

GenomicsCommunications MedicinePeer-reviewedMar 13, 2026

Minimal Correlation but Complementary Diagnostic Utility for Plasma Cell-free RNA and Proteins

Andrew Bliss, Conor Loy, Jihoon Kim…·Iwijn De Vlaminck

The paper compares plasma cell-free RNA and protein levels in children with inflammatory diseases, finding minimal correlation but similar diagnostic utility for distinguishing Kawasaki Disease from MIS-C.

DOI 10.1038/s43856-026-01489-7

humanbulk RNA-seq

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BioinformaticsInternational Journal of Molecular SciencesPeer-reviewedMay 26, 2021

Kawasaki Disease patient stratification and pathway analysis based on host transcriptomic and proteomic profiles

Heather Jackson, Stephanie Menikou, Shea Hamilton…·Myrsini Kaforou

This study stratifies Kawasaki Disease patients using transcriptomic and proteomic profiles, finding KD responses resemble bacterial infections but with distinct features suggesting alternative triggers.

19 citations

humanbulk RNA-seq

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