Author

Ally Perlina

Viome Life Sciences, Inc. (United States)ORCID 0000-0002-3554-7124Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Systems Biology· 4

Signature Assays, Organisms & Methods

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Organism:human· 4 Research Focus:benchmarking· 3 Assay:metagenomics· 3 Assay:bulk RNA-seq· 2 Approach:machine learning (classical)· 2 Approach:statistical model· 2 Research Focus:database / resource· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Guruduth S. BanavariD· 4 shared Momchilo VuyisichiD· 4 shared Hal TilyiD· 3 shared Ryan TomaiD· 3 shared Vishakh GopuiD· 3 shared Andrew HatchiD· 2 shared Benjamin PelleiD· 2 shared Francine R. CamachoiD· 2 shared

Activity by Year

2019-2020 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 43 mutual co-author links

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4 shared papersSystems Biology

Guruduth S. BanavarORCID

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4 papers

Recent·Most cited

Gut microbiome activity contributes to individual variation in glycemic response in adults

Hal Tily, Ally Perlina, Eric V. Patridge, Stephanie Gline, Matvey Genkin, Vishakh Gopu, Haely Lindau, Alisson Sjue, Iordan Slavov, Niels Klitgord, Momchilo Vuyisich, Helen Messier, Guruduth S. Banavar

The paper shows gut microbiome activity predicts individual glycemic responses to meals, beyond diet and body metrics.

bioRxiv · Nov 22, 2020 · PreprintSystems Biology

An accurate aging clock developed from the largest dataset of microbial and human gene expression reveals molecular mechanisms of aging

Vishakh Gopu, Ying Cai, Subha Krishnan, Sathyapriya Rajagopal, Francine R. Camacho, Ryan Toma, Pedro J. Torres, Momchilo Vuyisich, Ally Perlina, Guruduth S. Banavar, Hal Tily

This paper develops an aging clock using human and microbial gene expression data, showing associations between biological age and lifestyle factors.

bioRxiv · Sep 17, 2020 · PreprintSystems Biology

A clinically validated human capillary blood transcriptome test for global systems biology studies

Ryan Toma, Nathan Duval, Benjamin Pelle, Matthew Parks, Vishakh Gopu, Pedro J. Torres, Francine R. Camacho, Nan Shen, Subha Krishnan, Andrew Hatch, Hal Tily, Ally Perlina, Guruduth S. Banavar, Momchilo Vuyisich

The paper develops a clinically validated transcriptome test using capillary blood for global systems biology studies, enabling affordable and accessible gene expression analysis.

BioTechniques · Aug 10, 2020Peer-reviewedSystems Biology

A robust metatranscriptomic technology for population-scale studies of diet, gut microbiome, and human health

Andrew Hatch, James Horne, Ryan Toma, Brittany Twibell, Kalie Somerville, Benjamin Pelle, Kinga P. Canfield, Matvey Genkin, Guruduth S. Banavar, Ally Perlina, Helen Messier, Niels Klitgord, Momchilo Vuyisich

Viomega is a robust, automated stool metatranscriptomic method for population-scale studies, demonstrating stability and consistency across 10,000 samples.

International Journal of Genomics · Oct 1, 2019Peer-reviewedSystems Biology