Author

Vishakh Gopu

Viome Life Sciences, Inc. (United States)ORCID 0000-0001-7075-7533Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Systems Biology· 3

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 3 Organism:human· 3 Assay:bulk RNA-seq· 2 Approach:machine learning (classical)· 2 Assay:metagenomics· 2 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Ally PerlinaiD· 3 shared Guruduth S. BanavariD· 3 shared Hal TilyiD· 3 shared Momchilo VuyisichiD· 3 shared Francine R. CamachoiD· 2 shared Pedro J. TorresiD· 2 shared Ryan TomaiD· 2 shared Subha KrishnaniD· 2 shared

Activity by Year

2020-2020 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 40 mutual co-author links

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3 shared papersSystems Biology

Ally PerlinaORCID

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Author profile →

3 papers

Recent·Most cited

Gut microbiome activity contributes to individual variation in glycemic response in adults

Hal Tily, Ally Perlina, Eric V. Patridge, Stephanie Gline, Matvey Genkin, Vishakh Gopu, Haely Lindau, Alisson Sjue, Iordan Slavov, Niels Klitgord, Momchilo Vuyisich, Helen Messier, Guruduth S. Banavar

The paper shows gut microbiome activity predicts individual glycemic responses to meals, beyond diet and body metrics.

bioRxiv · Nov 22, 2020 · PreprintSystems Biology

An accurate aging clock developed from the largest dataset of microbial and human gene expression reveals molecular mechanisms of aging

Vishakh Gopu, Ying Cai, Subha Krishnan, Sathyapriya Rajagopal, Francine R. Camacho, Ryan Toma, Pedro J. Torres, Momchilo Vuyisich, Ally Perlina, Guruduth S. Banavar, Hal Tily

This paper develops an aging clock using human and microbial gene expression data, showing associations between biological age and lifestyle factors.

bioRxiv · Sep 17, 2020 · PreprintSystems Biology

A clinically validated human capillary blood transcriptome test for global systems biology studies

Ryan Toma, Nathan Duval, Benjamin Pelle, Matthew Parks, Vishakh Gopu, Pedro J. Torres, Francine R. Camacho, Nan Shen, Subha Krishnan, Andrew Hatch, Hal Tily, Ally Perlina, Guruduth S. Banavar, Momchilo Vuyisich

The paper develops a clinically validated transcriptome test using capillary blood for global systems biology studies, enabling affordable and accessible gene expression analysis.

BioTechniques · Aug 10, 2020Peer-reviewedSystems Biology