Author

Swati Kaushik

University of California, San FranciscoORCID 0000-0002-3562-8522Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Research Focus:drug response / drug discovery· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Assay:proteomics· 1 Approach:statistical model· 1

Frequent Co-Authors

James T. WebberiD· 1 shared Max V. Ranall· 1 shared Sourav BandyopadhyayiD· 1 shared

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2018-2018 · peak 1/yr

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3 top collaborators · 3 mutual co-author links

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1 shared paperBioinformatics

James T. WebberORCID

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1 paper

Recent·Most cited

BioinformaticsCell SystemsPeer-reviewedNov 1, 2018

Connecting tumor genomics with therapeutics through multi-dimensional network modules

James T. Webber, Max V. Ranall, Swati Kaushik, Sourav Bandyopadhyay

This paper introduces MAGNETIC, a method to integrate molecular data using functional networks, identifying gene modules in breast cancers and therapeutic biomarkers robust to differences between tumors and cell lines.

26 citations

humanbulk RNA-seq

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