Author

Ashleigh Holmes

James Hutton InstituteORCID 0000-0002-3627-667XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Organism:bacteria (other)· 1 Research Focus:database / resource· 1 Organism:E. coli· 1 Approach:experimental assay· 1 Research Focus:genome assembly· 1 Assay:metagenomics· 1

Frequent Co-Authors

Fiona BrennaniD· 3 shared Florence AbramiD· 3 shared Leighton PritchardiD· 3 shared Nicholas R. WatersiD· 3 shared Ben NolaniD· 1 shared Vincent O’FlahertyiD· 1 shared

Activity by Year

2018-2021 · peak 1/yr

Co-Author Collaboration Network

6 top collaborators · 15 mutual co-author links

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3 shared papersBioinformatics

Fiona BrennanORCID

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintJan 1, 2021

Mining underutilized whole-genome sequencing projects to improve 16S rRNA databases

Ben Nolan, Florence Abram, Fiona Brennan…·Nicholas R. Waters

The paper improves 16S rRNA databases by reassembling whole-genome sequencing data to generate high-quality sequences, enhancing taxonomic classification accuracy.

DOI 10.1101/2021.01.01.425045

metagenomicsstatistical model

𝕏 PostBluesky

BioinformaticsAccess MicrobiologyPeer-reviewedJun 19, 2020

Easily phylotyping E. coli via the EzClermont web app and command-line tool.

Nicholas R. Waters, Florence Abram, Fiona Brennan…·Leighton Pritchard

The paper implements an in silico Clermont PCR method for E. coli phylotyping as a web app and command-line tool.

143 citationstop 1%

E. coliwhole-genome sequencing

𝕏 PostBluesky

BioinformaticsNucleic Acids ResearchPeer-reviewedMar 12, 2018

riboSeed: leveraging prokaryotic genomic architecture to assemble across ribosomal regions

Nicholas R. Waters, Florence Abram, Fiona Brennan…·Leighton Pritchard

riboSeed improves bacterial genome assembly by leveraging conserved ribosomal operon flanking regions to bridge contigs and aid genome closure.

13 citations

bacteria (other)whole-genome sequencing

𝕏 PostBluesky