Author

Florence Abram

Ollscoil na Gaillimhe – University of GalwayORCID 0000-0001-7522-9158Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 3

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Organism:bacteria (other)· 1 Research Focus:database / resource· 1 Organism:E. coli· 1 Approach:experimental assay· 1 Research Focus:genome assembly· 1 Assay:metagenomics· 1

Frequent Co-Authors

Ashleigh HolmesiD· 3 shared Fiona BrennaniD· 3 shared Leighton PritchardiD· 3 shared Nicholas R. WatersiD· 3 shared Ben NolaniD· 1 shared Vincent O’FlahertyiD· 1 shared

Activity by Year

2018-2021 · peak 1/yr

Co-Author Collaboration Network

6 top collaborators · 15 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersBioinformatics

Ashleigh HolmesORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintJan 1, 2021

Mining underutilized whole-genome sequencing projects to improve 16S rRNA databases

Ben Nolan, Florence Abram, Fiona Brennan…·Nicholas R. Waters

The paper improves 16S rRNA databases by reassembling whole-genome sequencing data to generate high-quality sequences, enhancing taxonomic classification accuracy.

DOI 10.1101/2021.01.01.425045

metagenomicsstatistical model

𝕏 PostBluesky

BioinformaticsAccess MicrobiologyPeer-reviewedJun 19, 2020

Easily phylotyping E. coli via the EzClermont web app and command-line tool.

Nicholas R. Waters, Florence Abram, Fiona Brennan…·Leighton Pritchard

The paper implements an in silico Clermont PCR method for E. coli phylotyping as a web app and command-line tool.

143 citationstop 1%

E. coliwhole-genome sequencing

𝕏 PostBluesky

BioinformaticsNucleic Acids ResearchPeer-reviewedMar 12, 2018

riboSeed: leveraging prokaryotic genomic architecture to assemble across ribosomal regions

Nicholas R. Waters, Florence Abram, Fiona Brennan…·Leighton Pritchard

riboSeed improves bacterial genome assembly by leveraging conserved ribosomal operon flanking regions to bridge contigs and aid genome closure.

13 citations

bacteria (other)whole-genome sequencing

𝕏 PostBluesky