Author

Damla Senol Cali

Carnegie Mellon UniversityORCID 0000-0002-3665-6285Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Approach:experimental assay· 1 Approach:statistical model· 1

Frequent Co-Authors

Can AlkaniD· 2 shared Can FırtınaiD· 2 shared Jeremie S. KimiD· 2 shared Mohammed AlseriD· 2 shared Onur MutluiD· 2 shared Gagandeep SinghiD· 1 shared Jisung ParkiD· 1 shared Konstantinos KanellopoulosiD· 1 shared

Activity by Year

2023-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 39 mutual co-author links

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2 shared papersBioinformatics

Can AlkanORCID

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2 papers

Recent·Most cited

AirLift: A Fast and Comprehensive Technique for Remapping Alignments between Reference Genomes

Jeremie S. Kim, Can Fırtına, Meryem Banu Cavlak, Damla Senol Cali, Nastaran Hajinazar, Mohammed Alser, Can Alkan, Onur Mutlu

AirLift remaps reads from one reference genome to another efficiently and accurately, reducing execution time by up to 27.4x compared to full mapping.

IEEE Transactions on Computational Biology and Bioinformatics · Aug 19, 2024Peer-reviewedBioinformatics

BLEND: A Fast, Memory-Efficient, and Accurate Mechanism to Find Fuzzy Seed Matches in Genome Analysis

Can Fırtına, Jisung Park, Mohammed Alser, Jeremie S. Kim, Damla Senol Cali, Taha Shahroodi, Nika Mansouri Ghiasi, Gagandeep Singh, Konstantinos Kanellopoulos, Can Alkan, Onur Mutlu

BLEND improves genomic sequence analysis by efficiently finding fuzzy seed matches, enhancing speed, memory use, and accuracy in read overlapping and mapping.

NAR Genomics and Bioinformatics · Jan 10, 2023Peer-reviewedBioinformatics