Author

Jeremie S. Kim

ETH ZurichORCID 0000-0001-6153-9008Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Approach:experimental assay· 1 Approach:matrix factorization· 1

Frequent Co-Authors

Can AlkaniD· 3 shared Onur MutluiD· 3 shared Can FırtınaiD· 2 shared Damla Senol CaliiD· 2 shared Mohammed AlseriD· 2 shared Gagandeep SinghiD· 1 shared Hongyi XiniD· 1 shared Jisung ParkiD· 1 shared

Activity by Year

2017-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 35 mutual co-author links

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3 shared papersBioinformatics

Can AlkanORCID

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3 papers

Recent·Most cited

BioinformaticsIEEE Transactions on Computational Biology and BioinformaticsPeer-reviewedAug 19, 2024

AirLift: A Fast and Comprehensive Technique for Remapping Alignments between Reference Genomes

Jeremie S. Kim, Can Fırtına, Meryem Banu Cavlak…·Onur Mutlu

AirLift remaps reads from one reference genome to another efficiently and accurately, reducing execution time by up to 27.4x compared to full mapping.

5 citations

whole-genome sequencingexperimental assay

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BioinformaticsNAR Genomics and BioinformaticsPeer-reviewedJan 10, 2023

BLEND: A Fast, Memory-Efficient, and Accurate Mechanism to Find Fuzzy Seed Matches in Genome Analysis

Can Fırtına, Jisung Park, Mohammed Alser…·Onur Mutlu

BLEND improves genomic sequence analysis by efficiently finding fuzzy seed matches, enhancing speed, memory use, and accuracy in read overlapping and mapping.

38 citations

whole-genome sequencingstatistical model

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BioinformaticsbioRxivPreprintMay 7, 2017

LEAP: A Generalization Of The Landau-Vishkin Algorithm With Custom Gap Penalties

Hongyi Xin, Jeremie S. Kim, Sunny Nahar…·Onur Mutlu

The paper introduces LEAP, a generalized algorithm for approximate string matching that outperforms existing methods in speed under various scoring schemes.

2 citations

statistical modelmatrix factorization

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