Author

Eddie Kim

Rice UniversityORCID 0000-0002-3770-6838Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Organism:bacteria (other)· 1 Organism:virus· 1

Frequent Co-Authors

Bryce L. KilleiD· 2 shared Todd J. TreangeniD· 2 shared Adam M. PhillippyiD· 1 shared Esther G. LouiD· 1 shared Lauren B. StadleriD· 1 shared Michael NuteiD· 1 shared Michael WangiD· 1 shared Nicolae SapovaliD· 1 shared

Activity by Year

2024-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersBioinformatics

Bryce L. KilleORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

BioinformaticsNature CommunicationsPeer-reviewedJul 26, 2024

Olivar: automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens

Michael Wang, Esther G. Lou, Nicolae Sapoval…·Todd J. Treangen

Olivar automates variant-aware primer design for tiled amplicon sequencing of pathogens, improving mapping rates and coverage compared to existing methods.

11 citations

whole-genome sequencingstatistical model

𝕏 PostBluesky

BioinformaticsBioinformaticsPeer-reviewedMay 1, 2024

Parsnp 2.0: Scalable Core-Genome Alignment for Massive Microbial Datasets

Bryce L. Kille, Michael Nute, Victor Huang…·Todd J. Treangen

Parsnp 2.0 improves scalability and control for multiple genome alignment of microbial datasets, reducing memory and runtime while maintaining accuracy.

112 citationstop 1%

bacteria (other)virus

𝕏 PostBluesky